PeptideMap
(advanced)
Version 1.0.0
©1997-2001
Proteometrics
PROTEIN
Name
Amino Acid
Sequence
1 * 10 * 20 * 30 * 40 * 50 1
CHEMISTRY
Enzyme
none
Endoproteinase Arg C
Endoproteinase Asp N
Endoproteinase Glu C
Endoproteinase Lys C
CNBr
Trypsin
V8 (D,E)
V8 (E)
Allow maximum
0
1
2
3
4
5
6
missed cleavages
Enzyme
none
Endoproteinase Arg C
Endoproteinase Asp N
Endoproteinase Glu C
Endoproteinase Lys C
CNBr
Trypsin
V8 (D,E)
V8 (E)
Allow maximum
0
1
2
3
4
5
6
missed cleavages
User-Defined
Cleave Site(s)
Arginine (Arg,R)
Alanine (Ala,A)
Asparagine (Asn,N)
Aspartic acid (Asp,D)
Cysteine (Cys,C)
Glutamic acid (Glu,E)
Glutamine (Gln,Q)
Glycine (Gly,G)
Histidine (His,H)
Isoleucine (Ile,I)
Lysine (Lys,K)
Leucine (Leu,L)
Methionine (Met,M)
Phenylalanine (Phe,F)
Proline (Pro,P)
Serine (Ser,S)
Threonine (Thr,T)
Tryptophan (Trp,W)
Tyrosine (Tyr,Y)
Valine (Val,V)
Terminal
C
N
Allow maximum
0
1
2
3
4
5
6
missed cleavages
Modification
Do not cleave near Proline
User-Defined Enzymes:
Cleave Site(s)
Terminal
Max. incompletes
Modification
Cleave near Proline
GLOBAL MODIFICATIONS
Complete
Unmodified
4-vinyl-pyridine (Cys)
Acrylamide (Cys)
Iodoacetamide (Cys)
Iodoacetic acid (Cys)
Performic acid (Cys+O3)
Performic acid (Met+O2)
Performic acid (Met+O)
Partial
Unmodified
4-vinyl-pyridine (C)
Acrylamide (C)
Iodoacetamide (C)
Iodoacetic acid (C)
Nitration (Y)
Oxidation (M)
Performic acid (Cys+O3)
Performic acid (Met+O2)
Performic acid (Met+O)
Phosphorylation (S,T,Y)
Phosphorylation (S,T)
Phosphorylation (Y)
User-Defined
Site(s)
Arginine (Arg,R)
Alanine (Ala,A)
Asparagine (Asn,N)
Aspartic acid (Asp,D)
Cysteine (Cys,C)
Glutamic acid (Glu,E)
Glutamine (Gln,Q)
Glycine (Gly,G)
Histidine (His,H)
Isoleucine (Ile,I)
Lysine (Lys,K)
Leucine (Leu,L)
Methionine (Met,M)
Phenylalanine (Phe,F)
Proline (Pro,P)
Serine (Ser,S)
Threonine (Thr,T)
Tryptophan (Trp,W)
Tyrosine (Tyr,Y)
Valine (Val,V)
Formula
Min. Occupancy
0
1
2
3
4
5
6
# of sites
Max. Occupancy
0
1
2
3
4
5
6
# of sites
User-Defined Global Modifications:
Cleave Site(s)
Formula
Min. Occupancy
Max. Occupancy
LOCAL MODIFICATIONS
Chain
(first chain = 0)
Amino Acid Position
(first aa = 1)
Formula
Min. Occupancy
0
1
2
3
4
5
6
Max. Occupancy
0
1
2
3
4
5
6
User-Defined Local Modifications:
Chain
AA Position
Formula
Min.
Occupancy
Max. Occupancy
CROSS LINK
none
Disulfide
User-Defined
Cross Linking Reagent
N-Terminal is link site (like Lysine)
Max. number of fragments cross linked
1
2
3
4
5
Max. number of cross link attachments
1
2
3
4
5
6
7
8
9
10
Link Site(s) 1
Arginine (Arg,R)
Alanine (Ala,A)
Asparagine (Asn,N)
Aspartic acid (Asp,D)
Cysteine (Cys,C)
Glutamic acid (Glu,E)
Glutamine (Gln,Q)
Glycine (Gly,G)
Histidine (His,H)
Isoleucine (Ile,I)
Lysine (Lys,K)
Leucine (Leu,L)
Methionine (Met,M)
Phenylalanine (Phe,F)
Proline (Pro,P)
Serine (Ser,S)
Threonine (Thr,T)
Tryptophan (Trp,W)
Tyrosine (Tyr,Y)
Valine (Val,V)
Modification 1
Link Site(s) 2
Arginine (Arg,R)
Alanine (Ala,A)
Asparagine (Asn,N)
Aspartic acid (Asp,D)
Cysteine (Cys,C)
Glutamic acid (Glu,E)
Glutamine (Gln,Q)
Glycine (Gly,G)
Histidine (His,H)
Isoleucine (Ile,I)
Lysine (Lys,K)
Leucine (Leu,L)
Methionine (Met,M)
Phenylalanine (Phe,F)
Proline (Pro,P)
Serine (Ser,S)
Threonine (Thr,T)
Tryptophan (Trp,W)
Tyrosine (Tyr,Y)
Valine (Val,V)
Modification 2
MASSES
Charge State
M
MH+
Average Masses:
Tolerance
+/-
Da
%
ppm
Monoisotopic Masses:
:
Tolerance
+/-
Da
%
ppm
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